Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs28398424 chr16:8766774 A/G 1.11E-16 173 25.6 21.95 3.17 KM Plot
PCPG rs28468398 chr16:85221051 G/A 5.67E-9 172 25.6 24.23 15 KM Plot
PCPG rs28469260 chr8:126188014 A/G 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs28478252 chr3:136121600 A/C 0.000361 173 22.68 28.3 24.47 KM Plot
PCPG rs28479369 chr8:11305586 C/T 7.73E-6 178 25.77 19.43 14.15 KM Plot
PCPG rs28513133 chr16:1724957 G/A 0 176 25.47 18.2 2.93 KM Plot
PCPG rs28517369 chr3:80395885 T/C 5.33E-7 175 25.77 23.48 19.87 KM Plot
PCPG rs28525068 chr7:23799026 G/T 0.00033 176 25.4 25.67 NA KM Plot
PCPG rs28533410 chr17:80533547 T/G 2.45E-8 174 26.27 20.13 7.2 KM Plot
PCPG rs28561410 chr8:11305585 C/G 7.73E-6 178 25.77 19.43 14.15 KM Plot
PCPG rs28572313 chr17:74705183 A/G 0.000173 175 25.97 14.63 13.5 KM Plot
PCPG rs28597078 chr8:126230614 C/T 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs28597754 chr10:131960492 C/T 0 178 25.53 24.47 3.17 KM Plot
PCPG rs28606038 chr8:11294245 C/G 1.21E-5 173 25.77 18.2 14.15 KM Plot
PCPG rs28628344 chr16:1738772 A/G 0 173 25.53 19.3 2.93 KM Plot